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Chromium in PDB 7t50: Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Chromate-Bound Form

Protein crystallography data

The structure of Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Chromate-Bound Form, PDB code: 7t50 was solved by D.H.Y.Ngu, Z.Luo, B.Y.J.Lim, B.Kobe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.48 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.627, 41.223, 111.366, 90, 92.76, 90
R / Rfree (%) 23.5 / 26.6

Chromium Binding Sites:

The binding sites of Chromium atom in the Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Chromate-Bound Form (pdb code 7t50). This binding sites where shown within 5.0 Angstroms radius around Chromium atom.
In total 2 binding sites of Chromium where determined in the Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Chromate-Bound Form, PDB code: 7t50:
Jump to Chromium binding site number: 1; 2;

Chromium binding site 1 out of 2 in 7t50

Go back to Chromium Binding Sites List in 7t50
Chromium binding site 1 out of 2 in the Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Chromate-Bound Form


Mono view


Stereo pair view

A full contact list of Chromium with other atoms in the Cr binding site number 1 of Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Chromate-Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cr301

b:32.5
occ:1.00
CR A:CQ4301 0.0 32.5 1.0
O1 A:CQ4301 1.6 32.9 1.0
O3 A:CQ4301 1.6 34.1 1.0
O4 A:CQ4301 1.6 32.2 1.0
O2 A:CQ4301 1.6 33.3 1.0
HD2 A:PRO140 3.2 32.7 1.0
HB1 A:ALA139 3.4 40.6 1.0
HD1 A:TYR141 3.4 28.6 1.0
HB1 A:ALA31 3.4 31.7 1.0
H A:ILE168 3.5 33.1 1.0
HG21 A:ILE168 3.5 33.8 1.0
HA A:ALA139 3.6 39.5 1.0
HA A:ALA59 3.6 37.5 1.0
HG1 A:THR60 3.6 39.7 1.0
HB A:ILE168 3.6 34.4 1.0
H A:THR60 3.6 38.1 1.0
HB2 A:ALA79 3.6 29.0 1.0
HB3 A:ALA79 3.7 25.1 1.0
H A:ASN33 3.7 38.8 1.0
H A:ALA32 3.7 32.8 1.0
HG23 A:ILE168 3.7 32.9 1.0
HD22 A:ASN33 3.8 37.9 1.0
H A:TYR141 3.8 29.5 1.0
HB3 A:ALA32 3.9 32.2 1.0
CB A:ALA79 4.0 18.0 1.0
CG2 A:ILE168 4.0 13.7 1.0
HB2 A:TYR141 4.0 28.9 1.0
CB A:ALA139 4.0 19.8 1.0
CD A:PRO140 4.1 19.1 1.0
HB1 A:ALA79 4.1 26.2 1.0
HB2 A:ALA139 4.2 40.9 1.0
HB3 A:ASN33 4.2 36.3 1.0
CA A:ALA139 4.2 19.6 1.0
HB2 A:ASN167 4.3 29.7 1.0
N A:ALA32 4.3 17.9 1.0
CB A:ILE168 4.3 13.3 1.0
CD1 A:TYR141 4.3 14.7 1.0
N A:ILE168 4.3 14.2 1.0
N A:PRO140 4.4 17.5 1.0
OG1 A:THR60 4.4 17.6 1.0
CB A:ALA31 4.4 17.9 1.0
N A:THR60 4.4 18.4 1.0
N A:ASN33 4.5 14.4 1.0
CA A:ALA59 4.5 14.6 1.0
C A:ALA139 4.6 17.9 1.0
HD3 A:PRO140 4.6 34.1 1.0
ND2 A:ASN33 4.6 13.9 1.0
N A:TYR141 4.7 14.2 1.0
HA A:ALA31 4.7 33.8 1.0
O A:GLY58 4.7 18.9 1.0
HA A:ASN167 4.7 29.9 1.0
CB A:ALA32 4.8 18.5 1.0
HB2 A:ALA31 4.8 32.5 1.0
HB2 A:PRO140 4.8 38.8 1.0
CB A:TYR141 4.9 14.0 1.0
HB1 A:ALA59 4.9 37.7 1.0
C A:ALA31 4.9 18.7 1.0
HB3 A:ALA139 4.9 39.6 1.0
HG22 A:ILE168 4.9 33.2 1.0
CA A:ALA31 4.9 18.4 1.0
HB3 A:ALA31 4.9 31.7 1.0
HE1 A:TYR141 5.0 28.3 1.0
HB A:THR60 5.0 38.4 1.0
HG2 A:PRO140 5.0 33.9 1.0
CA A:ALA32 5.0 18.3 1.0
CA A:ILE168 5.0 13.5 1.0

Chromium binding site 2 out of 2 in 7t50

Go back to Chromium Binding Sites List in 7t50
Chromium binding site 2 out of 2 in the Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Chromate-Bound Form


Mono view


Stereo pair view

A full contact list of Chromium with other atoms in the Cr binding site number 2 of Crystal Structure of the Molybdate-Binding Periplasmic Protein Moda From the Bacteria Pseudomonsa Aeruginosa in Chromate-Bound Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cr301

b:28.4
occ:1.00
CR B:CQ4301 0.0 28.4 1.0
O1 B:CQ4301 1.6 28.4 1.0
O3 B:CQ4301 1.6 28.4 1.0
O2 B:CQ4301 1.6 28.4 1.0
O4 B:CQ4301 1.6 28.4 1.0
HD2 B:PRO140 3.2 53.1 1.0
HB1 B:ALA139 3.3 53.0 1.0
HG22 B:ILE168 3.4 51.6 1.0
HB1 B:ALA31 3.4 55.6 1.0
HD1 B:TYR141 3.5 52.3 1.0
HB2 B:ALA79 3.5 55.5 1.0
H B:ALA32 3.5 56.1 1.0
H B:ILE168 3.5 52.2 1.0
HA B:ALA59 3.6 56.6 1.0
HB B:ILE168 3.6 51.5 1.0
H B:THR60 3.6 55.6 1.0
HG1 B:THR60 3.6 56.0 1.0
H B:ASN33 3.6 53.9 1.0
HG21 B:ILE168 3.6 51.6 1.0
HA B:ALA139 3.6 52.8 1.0
HB3 B:ALA79 3.7 55.5 1.0
HB3 B:ALA32 3.7 53.6 1.0
HD22 B:ASN33 3.8 54.5 1.0
H B:TYR141 3.8 51.3 1.0
CG2 B:ILE168 3.9 16.5 1.0
HB2 B:TYR141 3.9 50.6 1.0
CB B:ALA79 3.9 22.3 1.0
HB1 B:ALA79 4.0 55.5 1.0
CB B:ALA139 4.1 17.5 1.0
CD B:PRO140 4.1 19.0 1.0
HB3 B:ASN33 4.1 53.6 1.0
N B:ALA32 4.1 21.3 1.0
HB2 B:ALA139 4.2 53.0 1.0
CB B:ILE168 4.2 15.7 1.0
CA B:ALA139 4.3 17.6 1.0
HB2 B:ASN167 4.3 54.2 1.0
CD1 B:TYR141 4.3 17.4 1.0
N B:ILE168 4.4 16.9 1.0
CB B:ALA31 4.4 18.1 1.0
N B:ASN33 4.4 17.0 1.0
OG1 B:THR60 4.4 19.1 1.0
N B:THR60 4.4 20.1 1.0
N B:PRO140 4.4 18.6 1.0
HD3 B:PRO140 4.5 53.1 1.0
CA B:ALA59 4.5 18.6 1.0
CB B:ALA32 4.5 23.0 1.0
ND2 B:ASN33 4.6 16.1 1.0
C B:ALA139 4.6 17.5 1.0
N B:TYR141 4.6 17.5 1.0
HA B:ALA31 4.7 55.7 1.0
O B:GLY58 4.7 19.4 1.0
HA B:ASN167 4.8 53.5 1.0
CB B:TYR141 4.8 16.8 1.0
HG23 B:ILE168 4.8 51.6 1.0
HB2 B:ALA31 4.8 55.6 1.0
CA B:ALA32 4.8 22.1 1.0
C B:ALA31 4.8 18.5 1.0
HB2 B:ALA32 4.8 53.6 1.0
CA B:ALA31 4.9 17.9 1.0
HB3 B:ALA139 4.9 53.0 1.0
HB3 B:ALA31 4.9 55.6 1.0
HB1 B:ALA59 4.9 56.6 1.0
HB B:THR60 4.9 56.9 1.0
CA B:ILE168 5.0 16.4 1.0
CB B:ASN33 5.0 16.8 1.0

Reference:

E.A.Maunders, D.H.Y.Ngu, K.Ganio, S.I.Hossain, B.Y.J.Lim, M.G.Leeming, Z.Luo, A.Tan, E.Deplazes, B.Kobe, C.A.Mcdevitt. The Impact of Chromate on Pseudomonas Aeruginosa Molybdenum Homeostasis. Front Microbiol V. 13 03146 2022.
ISSN: ESSN 1664-302X
PubMed: 35685933
DOI: 10.3389/FMICB.2022.903146
Page generated: Tue Jul 30 20:07:45 2024

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